pheno-utils

A pip-installable python library for Dataloader and analysis tools.

See full documentation

Install

pip install pheno_utils

Features: Data Loaders

• PhenoLoader / DataLoader
  • Full access to data fields in a specific dataset
  • Access to tabular features
  • Access to raw data (images, time series, genetic variants)
  • Access to field metadata
• MetaLoader
  • Get an overview of all datasets and search throughout datasets
  • Load tabular features from multiple datasets
  • Load paths to raw data from multiple datasets
• load_subset
  • Helper function to get train / test data using PhenoLoader / MetaLoader

How to use

Examples:

from pheno_utils import PhenoLoader

dl = PhenoLoader("fundus")

from pheno_utils import MetaLoader

ml = MetaLoader()