from pheno_utils import PhenoLoader16-blood_tests
16 - blood tests
The lab tests in this data set of the Human Phenotype Project are based on tests performed to participants in the community as part of their regular medical care at their HMO (Health Maintenance Organization). Participants are asked to upload their blood/urine tests done at their HMOs from previous years. These tests range from the very common CBC and chemistry tests, Vitamins levels to the standard PCRs for infectious diseases all the way to rare tests requiring the user to measure urine for 24h.
The information is stored in 1 parquet file blood_tests.parquet.
dl = PhenoLoader('blood_tests', age_sex_dataset=None)
dlDataLoader for blood_tests with
65 fields
1 tables: ['blood_tests']dl.dict| field_string | description_string | parent_dataframe | relative_location | value_type | units | sampling_rate | item_type | array | cohorts | data_type | debut | pandas_dtype | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | |||||||||||||
| hmo | HMO | One of 4 Isreali HMOs | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| collection_date | Collection date | Collection date | NaN | blood_tests.parquet | Time | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | datetime64[ns] |
| bt__albumin_float_value | Blood test - Albumin (Numerical) | Albumin | NaN | blood_tests.parquet | Continuous | g/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__alkaline_phosphatase_float_value | Blood test - Alkaline Phosphatase (Numerical) | ALKP - Alkaline Phosphatase | NaN | blood_tests.parquet | Continuous | u/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__alt_float_value | Blood test - ALT (Numerical) | ALT (GPT) - Alanine Aminotransferease | NaN | blood_tests.parquet | Continuous | u/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__ast_float_value | Blood test - AST (Numerical) | AST (GOT) - Aspartate Aminotransferase | NaN | blood_tests.parquet | Continuous | u/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__basophils_%_float_value | Blood test - Basophils % (Numerical) | Baso % - Basophils percent | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__basophils_abs_float_value | Blood test - Basophils # (Numerical) | Baso # - Basophils absolute | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__calcium_float_value | Blood test - Calcium (Numerical) | Ca - Calcium | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__creatinine_float_value | Blood test - Creatinine (Numerical) | Creatinine | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__direct_bilirubin_categorical_value | Blood test - Direct Bilirubin (Categorical) | Bilirubin Direct/Conjugated | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__direct_bilirubin_float_value | Blood test - Direct Bilirubin (Numerical) | Bilirubin Direct/Conjugated | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__eosinophils_%_float_value | Blood test - Eosinophils % (Numerical) | Eos % - eosinophils percent | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__eosinophils_abs_float_value | Blood test - Eosinophils # (Numerical) | Eos # - eosinophils absolute | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__estradiol_categorical_value | Blood test - Estradiol (Categorical) | E2 - Estradiol | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__estradiol_float_value | Blood test - Estradiol (Numerical) | E2 - Estradiol | NaN | blood_tests.parquet | Continuous | pmol/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__ferritin_categorical_value | Blood test - Ferritin (Categorical) | Ferritin | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__ferritin_float_value | Blood test - Ferritin (Numerical) | Ferritin | NaN | blood_tests.parquet | Continuous | ng/ml | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__ggt_float_value | Blood test - GGT (Numerical) | GGT - gama-Glutamyl Transpeptidase | NaN | blood_tests.parquet | Continuous | u/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__glucose_float_value | Blood test - Glucose (Numerical) | Glucose | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__hba1c_float_value | Blood test - HbA1C (Numerical) | HbA1C % | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__hdl_cholesterol_float_value | Blood test - HDL Cholesterol (Numerical) | HDL Cholesterol | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__hematocrit_float_value | Blood test - Hematocrit (Numerical) | HCT - Hematocrit | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__hemoglobin_float_value | Blood test - Hemoglobin (Numerical) | Hb - Hemoglobin | NaN | blood_tests.parquet | Continuous | g/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__ldl_cholesterol_float_value | Blood test - LDL Cholesterol (Numerical) | LDL Cholesterol | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__lymphocytes_%_float_value | Blood test - Lymphocytes % (Numerical) | Lymp % - Lymphocytes percent | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__lymphocytes_abs_float_value | Blood test - Lymphocytes # (Numerical) | Lymp # - Lymphocytes absolute | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__mch_float_value | Blood test - MCH (Numerical) | MCH - Mean cell Hemoglobin | NaN | blood_tests.parquet | Continuous | pg/cell | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__mchc_float_value | Blood test - MCHC (Numerical) | MCHC - Mean cell Hemoglobin concentration | NaN | blood_tests.parquet | Continuous | g/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__mcv_float_value | Blood test - MCV (Numerical) | MCV - Mean Corpuscular Volume or Mean cell volume | NaN | blood_tests.parquet | Continuous | fl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__monocytes_%_float_value | Blood test - Monocytes % (Numerical) | Mono % - Monoctypes percent | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__monocytes_abs_float_value | Blood test - Monocytes # (Numerical) | Mono % - Monoctypes absolute | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__mpv_float_value | Blood test - MPV (Numerical) | MPV - Mean Platelet Volume | NaN | blood_tests.parquet | Continuous | fl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__neutrophils_%_float_value | Blood test - Neutrophils % (Numerical) | Neut % - Neutrophils percent | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__neutrophils_abs_float_value | Blood test - Neutrophils # (Numerical) | Neut # - Neutrophils absolute | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__non_hdl_cholesterol_float_value | Blood test - Non HDL Cholesterol (Numerical) | Non HDL Cholesterol | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__phosphore_float_value | Blood test - Phosphore (Numerical) | P - Phosphore | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__platelets_float_value | Blood test - Platelets (Numerical) | PLT - Platelets | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__potassium_float_value | Blood test - Potassium (Numerical) | K+ - Potassium | NaN | blood_tests.parquet | Continuous | mmol/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__rbc_float_value | Blood test - RBC (Numerical) | RBC - Red Blood Cells | NaN | blood_tests.parquet | Continuous | m/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__rdw_float_value | Blood test - RDW (Numerical) | RDW - Red Blood Cell Distribution Width | NaN | blood_tests.parquet | Continuous | % | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__rheumatoid_factor_categorical_value | Blood test - Rheumatoid Factor (Categorical) | Rheumatoid Factor Quantit | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__rheumatoid_factor_float_value | Blood test - Rheumatoid Factor (Numerical) | Rheumatoid Factor Quantit | NaN | blood_tests.parquet | Continuous | iu/ml | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__sodium_float_value | Blood test - Sodium (Numerical) | Na - Sodium | NaN | blood_tests.parquet | Continuous | mmol/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__testosterone_total_categorical_value | Blood test - Testosterone Total (Categorical) | Total Testosterone | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__testosterone_total_float_value | Blood test - Testosterone Total (Numerical) | Total Testosterone | NaN | blood_tests.parquet | Continuous | nmol/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__total_bilirubin_categorical_value | Blood test - Total Bilirubin (Categorical) | Total Billirubin | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__total_bilirubin_float_value | Blood test - Total Bilirubin (Numerical) | Total Billirubin | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__total_cholesterol_float_value | Blood test - Total Cholesterol (Numerical) | Total Cholesterol | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__total_protein_float_value | Blood test - Total Protein (Numerical) | Total Protien | NaN | blood_tests.parquet | Continuous | g/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__triglycerides_float_value | Blood test - Triglycerides (Numerical) | Triglycerides | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__tsh_categorical_value | Blood test - TSH (Categorical) | TSH - Thyroid-stimulating hormone | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__tsh_float_value | Blood test - TSH (Numerical) | TSH - Thyroid-stimulating hormone | NaN | blood_tests.parquet | Continuous | miu/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__urate_float_value | Blood test - Urate (Numerical) | Urate / Uric Acid | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__urea_float_value | Blood test - Urea (Numerical) | Urea | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__vitamin_b12_categorical_value | Blood test - Vitamin B12 (Categorical) | Vitamin B12 - Cobalamin | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__vitamin_b12_float_value | Blood test - Vitamin B12 (Numerical) | Vitamin B12 - Cobalamin | NaN | blood_tests.parquet | Continuous | pg/ml | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__vitamin_d_categorical_value | Blood test - Vitamin D (Categorical) | Vitamin D | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| bt__vitamin_d_float_value | Blood test - Vitamin D (Numerical) | Vitamin D | NaN | blood_tests.parquet | Continuous | ng/ml | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| bt__wbc_float_value | Blood test - WBC (Numerical) | WBC - White blood cells | NaN | blood_tests.parquet | Continuous | k/ul | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| urine__acr_categorical_value | Urine test - ACR (Categorical) | ACR - Albumin / Creatinine Ratio | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| urine__acr_float_value | Urine test - ACR (Numerical) | ACR - Albumin / Creatinine Ratio | NaN | blood_tests.parquet | Continuous | mg/g creatinine | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| urine__creatinine_float_value | Urine test - Creatinine (Numerical) | Creatinine | NaN | blood_tests.parquet | Continuous | mg/dl | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |
| urine__microalbumin_categorical_value | Urine test - Microalbumin (Categorical) | Microalbumin | NaN | blood_tests.parquet | Categorical (multiple) | None | NaN | tabular | Single | 10K | NaN | 2015-01-01 | category |
| urine__microalbumin_float_value | Urine test - Microalbumin (Numerical) | Microalbumin | NaN | blood_tests.parquet | Continuous | mg/l | NaN | tabular | Single | 10K | NaN | 2015-01-01 | float64 |